Details for gene set DNA_METABOLIC

Table: GSEA Results Summary

Dataset	RNR_GSEA_DESEQ2_FC
Phenotype	NoPhenotypeAvailable
Upregulated in class	na_pos
GeneSet	DNA_METABOLIC_PROCESS
Enrichment Score (ES)	0.13760506
Normalized Enrichment Score (NES)	2.522118
Nominal p-value	0.0
FDR q-value	0.00422005
FWER p-Value	0.049

Table: GSEA details [plain text format]
	PROBE	RANK IN GENE LIST	RANK METRIC SCORE	RUNNING ES	CORE ENRICHMENT
1	DMC1	813	0.614	-0.0403	Yes
2	TNP1	886	0.570	-0.0403	Yes
3	PPARGC1A	1513	0.347	-0.0704	Yes
4	KRT7	1525	0.346	-0.0670	Yes
5	TOP2A	1826	0.288	-0.0794	Yes
6	BTG2	1909	0.274	-0.0799	Yes
7	GADD45G	2071	0.254	-0.0847	Yes
8	XPC	2265	0.232	-0.0912	Yes
9	RPA1	2340	0.224	-0.0913	Yes
10	ATF7IP	2439	0.214	-0.0927	Yes
11	TSPYL2	2444	0.214	-0.0890	Yes
12	ATRX	2448	0.214	-0.0852	Yes
13	MSH3	2468	0.212	-0.0823	Yes
14	MLH1	2496	0.210	-0.0798	Yes
15	REV3L	2653	0.197	-0.0843	Yes
16	RAG1	2709	0.193	-0.0833	Yes
17	NT5E	2750	0.190	-0.0816	Yes
18	RAD51	2804	0.185	-0.0805	Yes
19	RAD21	2827	0.183	-0.0777	Yes
20	ATM	2839	0.183	-0.0744	Yes
21	BRCA1	2859	0.182	-0.0715	Yes
22	POLQ	2918	0.178	-0.0707	Yes
23	ENPP7	2997	0.173	-0.0710	Yes
24	RAD54L	3193	0.160	-0.0776	Yes
25	ORC2	3246	0.158	-0.0765	Yes
26	HMGB2	3268	0.156	-0.0737	Yes
27	RPA4	3277	0.156	-0.0702	Yes
28	ISG20	3335	0.153	-0.0693	Yes
29	CDKN2A	3352	0.153	-0.0662	Yes
30	PURA	3473	0.147	-0.0688	Yes
31	GADD45A	3492	0.146	-0.0658	Yes
32	MCM2	3561	0.142	-0.0656	Yes
33	LIG1	3623	0.139	-0.0650	Yes
34	POLK	3678	0.136	-0.0639	Yes
35	RBBP8	3743	0.133	-0.0635	Yes
36	KPNA2	3854	0.128	-0.0655	Yes
37	SETX	3873	0.128	-0.0625	Yes
38	ATR	3902	0.127	-0.0601	Yes
39	POLA1	3973	0.124	-0.0600	Yes
40	RBMS1	3999	0.122	-0.0574	Yes
41	ATXN3	4011	0.122	-0.0540	Yes
42	TDG	4118	0.118	-0.0558	Yes
43	SMC1A	4150	0.117	-0.0536	Yes
44	LIG4	4313	0.111	-0.0584	Yes
45	RECQL	4502	0.105	-0.0647	Yes
46	TP73	4512	0.104	-0.0612	Yes
47	RFC1	4523	0.104	-0.0578	Yes
48	TERT	4656	0.099	-0.0611	Yes
49	SMARCAD1	4884	0.092	-0.0695	Yes
50	ORC3	5020	0.088	-0.0729	Yes
51	ERCC4	5043	0.088	-0.0701	Yes
52	XRCC2	5063	0.087	-0.0672	Yes
53	RAD50	5089	0.086	-0.0646	Yes
54	XRCC5	5094	0.086	-0.0609	Yes
55	RAD54B	5135	0.085	-0.0591	Yes
56	BRCA2	5211	0.083	-0.0592	Yes
57	TERF2IP	5321	0.080	-0.0612	Yes
58	ERCC6	5325	0.080	-0.0574	Yes
59	EXO1	5410	0.078	-0.0580	Yes
60	UPF1	5501	0.075	-0.0590	Yes
61	CSNK1E	5539	0.074	-0.0570	Yes
62	REV1	5551	0.074	-0.0537	Yes
63	MRE11A	5577	0.073	-0.0511	Yes
64	KAT7	5588	0.073	-0.0477	Yes
65	LIG3	5593	0.073	-0.0439	Yes
66	MCM3	5670	0.070	-0.0441	Yes
67	CCDC88A	5807	0.067	-0.0476	Yes
68	DDB1	5865	0.066	-0.0467	Yes
69	MSH4	5956	0.063	-0.0477	Yes
70	SETMAR	5962	0.063	-0.0440	Yes
71	NUP98	6087	0.060	-0.0468	Yes
72	GTF2H1	6109	0.060	-0.0440	Yes
73	DKC1	6130	0.059	-0.0411	Yes
74	MSH6	6174	0.058	-0.0395	Yes
75	TBRG1	6319	0.055	-0.0434	Yes
76	RAD17	6346	0.054	-0.0408	Yes
77	GLI2	6380	0.053	-0.0387	Yes
78	CDC45	6427	0.052	-0.0372	Yes
79	TSN	6433	0.052	-0.0335	Yes
80	PIF1	6486	0.051	-0.0324	Yes
81	HUS1	6527	0.050	-0.0306	Yes
82	UVRAG	6528	0.050	-0.0267	Yes
83	UBE2V1	6727	0.045	-0.0335	Yes
84	POLI	6742	0.045	-0.0303	Yes
85	NASP	6833	0.043	-0.0313	Yes
86	MCM3AP	6835	0.043	-0.0274	Yes
87	PTGES3	7005	0.039	-0.0326	Yes
88	POLE	7013	0.039	-0.0290	Yes
89	VCP	7136	0.036	-0.0317	Yes
90	DBF4	7213	0.035	-0.0319	Yes
91	RAD51C	7251	0.034	-0.0300	Yes
92	DNASE2	7263	0.034	-0.0266	Yes
93	TGFB1	7321	0.033	-0.0258	Yes
94	NOL8	7537	0.028	-0.0335	Yes
95	TEP1	7544	0.028	-0.0299	Yes
96	WRNIP1	7727	0.024	-0.0358	Yes
97	FANCC	7749	0.024	-0.0330	Yes
98	MCM5	7761	0.024	-0.0297	Yes
99	ALKBH1	7770	0.024	-0.0262	Yes
100	KPNA1	7844	0.022	-0.0262	Yes
101	HMGB1	7903	0.021	-0.0254	Yes
102	ERCC8	7917	0.021	-0.0221	Yes
103	SET	7928	0.021	-0.0187	Yes
104	RPAIN	7943	0.020	-0.0155	Yes
105	SMG6	7945	0.020	-0.0116	Yes
106	ORC4	7970	0.020	-0.0090	Yes
107	KIN	7980	0.020	-0.0055	Yes
108	UBE2A	8073	0.018	-0.0066	Yes
109	CEBPG	8171	0.016	-0.0079	Yes
110	DNMT3A	8224	0.015	-0.0068	Yes
111	MSH5	8258	0.014	-0.0046	Yes
112	ERCC3	8288	0.013	-0.0022	Yes
113	TFAM	8365	0.012	-0.0024	Yes
114	RAD1	8370	0.012	0.0013	Yes
115	HELLS	8405	0.011	0.0034	Yes
116	DMAP1	8456	0.010	0.0046	Yes
117	KAT5	8466	0.010	0.0081	Yes
118	ABL1	8493	0.009	0.0106	Yes
119	PMS2	8607	0.007	0.0084	Yes
120	IGHMBP2	8688	0.005	0.0080	Yes
121	UBE2V2	8715	0.005	0.0106	Yes
122	MNAT1	8754	0.004	0.0125	Yes
123	NAP1L1	8779	0.004	0.0151	Yes
124	PARP1	8845	0.002	0.0155	Yes
125	TLK1	8868	0.002	0.0183	Yes
126	RAD51B	8953	0.000	0.0177	Yes
127	XRCC6	8983	-0.000	0.0200	Yes
128	REC8	8996	-0.001	0.0233	Yes
129	XAB2	9003	-0.001	0.0270	Yes
130	ERCC5	9014	-0.001	0.0304	Yes
131	MMS19	9052	-0.002	0.0323	Yes
132	TNFSF13	9130	-0.004	0.0321	Yes
133	RPA3	9158	-0.004	0.0346	Yes
134	TERF2	9203	-0.005	0.0361	Yes
135	CYCS	9213	-0.005	0.0396	Yes
136	SMARCB1	9276	-0.006	0.0402	Yes
137	NBN	9337	-0.008	0.0408	Yes
138	XRN2	9481	-0.010	0.0370	Yes
139	RAN	9514	-0.011	0.0392	Yes
140	PPT1	9515	-0.011	0.0432	Yes
141	POLD4	9627	-0.014	0.0411	Yes
142	GTPBP4	9630	-0.014	0.0449	Yes
143	PARP3	9631	-0.014	0.0489	Yes
144	TYMP	9739	-0.016	0.0470	Yes
145	TLK2	9758	-0.016	0.0500	Yes
146	DNMT3B	9777	-0.017	0.0530	Yes
147	REPIN1	9781	-0.017	0.0568	Yes
148	RAD51D	9895	-0.019	0.0546	Yes
149	PMS1	9977	-0.020	0.0541	Yes
150	PICK1	10017	-0.021	0.0559	Yes
151	RFC3	10089	-0.022	0.0560	Yes
152	MPG	10093	-0.022	0.0598	Yes
153	GATAD2A	10123	-0.023	0.0622	Yes
154	CECR2	10133	-0.023	0.0657	Yes
155	POLL	10140	-0.023	0.0693	Yes
156	POLG2	10162	-0.023	0.0721	Yes
157	CSNK1D	10177	-0.024	0.0753	Yes
158	SUMO1	10247	-0.025	0.0755	Yes
159	POLG	10274	-0.025	0.0780	Yes
160	MGMT	10385	-0.028	0.0760	Yes
161	DUT	10387	-0.028	0.0799	Yes
162	XRCC3	10402	-0.028	0.0831	Yes
163	UNG	10470	-0.029	0.0834	Yes
164	CDK2AP1	10537	-0.031	0.0837	Yes
165	TINF2	10724	-0.035	0.0776	Yes
166	AIFM1	10743	-0.035	0.0805	Yes
167	RAD52	10747	-0.035	0.0843	Yes
168	PRIM1	10763	-0.035	0.0875	Yes
169	RUVBL2	10866	-0.038	0.0859	Yes
170	RECQL5	10934	-0.040	0.0862	Yes
171	UBE2B	10935	-0.040	0.0901	Yes
172	BNIP3	10944	-0.040	0.0937	Yes
173	TPD52L1	10967	-0.041	0.0964	Yes
174	PNKP	10982	-0.041	0.0996	Yes
175	CDK2	11000	-0.041	0.1026	Yes
176	FEN1	11034	-0.042	0.1048	Yes
177	SOD1	11052	-0.043	0.1078	Yes
178	POLB	11141	-0.045	0.1070	Yes
179	ERCC2	11152	-0.045	0.1104	Yes
180	SMARCAL1	11179	-0.046	0.1129	Yes
181	UBE2N	11206	-0.047	0.1155	Yes
182	IL4	11242	-0.048	0.1175	Yes
183	MCM7	11334	-0.050	0.1165	Yes
184	DFFA	11355	-0.050	0.1194	Yes
185	RAD23B	11359	-0.050	0.1232	Yes
186	PTMS	11481	-0.053	0.1205	Yes
187	CHEK1	11554	-0.054	0.1206	Yes
188	DNMT1	11684	-0.058	0.1175	Yes
189	TIPIN	11806	-0.060	0.1149	Yes
190	POLE3	11839	-0.062	0.1171	Yes
191	OGG1	11849	-0.062	0.1205	Yes
192	RNASEH2A	11905	-0.063	0.1215	Yes
193	POT1	11976	-0.065	0.1216	Yes
194	ERCC1	11992	-0.065	0.1248	Yes
195	CIB1	12043	-0.066	0.1260	Yes
196	BLM	12264	-0.071	0.1180	Yes
197	POLE2	12277	-0.071	0.1213	Yes
198	APTX	12294	-0.072	0.1244	Yes
199	POLD2	12350	-0.073	0.1253	Yes
200	CDT1	12411	-0.075	0.1260	Yes
201	ORC5	12423	-0.075	0.1294	Yes
202	SUPV3L1	12447	-0.076	0.1321	Yes
203	NAE1	12534	-0.078	0.1314	Yes
204	ACD	12542	-0.078	0.1349	Yes
205	SMUG1	12608	-0.081	0.1353	Yes
206	DFFB	12640	-0.082	0.1376	Yes
207	MSH2	12769	-0.085	0.1346	No
208	GMNN	12895	-0.089	0.1317	No
209	RAD23A	13257	-0.100	0.1161	No
210	APEX1	13312	-0.102	0.1171	No
211	DDB2	13427	-0.106	0.1148	No
212	RAD9A	13508	-0.108	0.1144	No
213	NF2	13531	-0.109	0.1172	No
214	EGF	13596	-0.111	0.1176	No
215	POLH	13597	-0.111	0.1216	No
216	RPA2	13810	-0.120	0.1140	No
217	RFC4	13817	-0.120	0.1176	No
218	MUTYH	13929	-0.125	0.1156	No
219	FANCA	13979	-0.127	0.1168	No
220	PRIM2	13994	-0.128	0.1200	No
221	TREX2	14188	-0.138	0.1135	No
222	POLD1	14247	-0.141	0.1143	No
223	KCTD13	14341	-0.146	0.1132	No
224	RECQL4	14434	-0.150	0.1121	No
225	FANCG	14526	-0.155	0.1111	No
226	BAX	14600	-0.158	0.1111	No
227	ASF1A	14646	-0.161	0.1126	No
228	CDKN2D	14651	-0.161	0.1163	No
229	CDC6	14834	-0.174	0.1104	No
230	PNP	14864	-0.176	0.1128	No
231	XRCC6BP1	14917	-0.179	0.1139	No
232	TP53	15141	-0.196	0.1057	No
233	GLI1	15289	-0.208	0.1017	No
234	S100A11	15484	-0.226	0.0951	No
235	NT5M	15676	-0.246	0.0886	No
236	ORC1	15718	-0.251	0.0903	No
237	CD40LG	15950	-0.282	0.0817	No
238	IGF1	16206	-0.318	0.0718	No
239	NTHL1	16239	-0.325	0.0740	No
240	NHEJ1	16551	-0.388	0.0610	No
241	IGFBP4	16585	-0.396	0.0632	No
242	CCNO	16694	-0.425	0.0613	No
243	ADRA1D	16824	-0.461	0.0582	No
244	IL7R	16969	-0.496	0.0543	No
245	GTF2H4	17022	-0.507	0.0554	No
246	ACHE	17045	-0.515	0.0582	No
247	XRCC4	17212	-0.584	0.0531	No
248	FOXL2	17284	-0.620	0.0532	No
249	EREG	17447	-0.702	0.0483	No
250	CIDEA	17546	-0.764	0.0470	No
251	FOS	17601	-0.807	0.0480	No
252	PRKCG	17625	-0.827	0.0507	No
253	SYCP1	18415	-2.067	0.0117	No